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Yes, enabling IP Passthrough mode on a DAL-based device (a Digi device that runs the DAL Operating System) should not inherently interfere with connectivity to Digi Remote Manager.
Related links:
Meet the Digi Accelerated Linux Operating System (DAL OS)
Configure an interface to operate in IP Passthrough mode
LAN port with IP Passthrough
Add a device to your Digi Remote Manager inventory